Details
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Bug
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Status: Open
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Major
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Resolution: Unresolved
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3.3.2
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None
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None
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Hadoop version 3.3.2
Spark version 3.4.0-SNAPSHOT
use minio:latest to mock S3 filesystem
Description
Spark job uses aws s3 as fileSystem and calls
fs.copyFromLocalFile(delSrc, overwrite, src, dest) delSrc = false overwrite = true src = "/Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar" dest = "s3a://spark/spark-upload-a703d8e7-8dd2-4e29-beca-b4df2fedefbd/spark-examples_2.12-3.4.0-SNAPSHOT.jar"
Then throw a PathIOException, message is as follow
Exception in thread "main" org.apache.spark.SparkException: Uploading file /Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar failed... at org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileUri(KubernetesUtils.scala:332) at org.apache.spark.deploy.k8s.KubernetesUtils$.$anonfun$uploadAndTransformFileUris$1(KubernetesUtils.scala:277) at scala.collection.TraversableLike.$anonfun$map$1(TraversableLike.scala:286) at scala.collection.mutable.ResizableArray.foreach(ResizableArray.scala:62) at scala.collection.mutable.ResizableArray.foreach$(ResizableArray.scala:55) at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:49) at scala.collection.TraversableLike.map(TraversableLike.scala:286) at scala.collection.TraversableLike.map$(TraversableLike.scala:279) at scala.collection.AbstractTraversable.map(Traversable.scala:108) at org.apache.spark.deploy.k8s.KubernetesUtils$.uploadAndTransformFileUris(KubernetesUtils.scala:275) at org.apache.spark.deploy.k8s.features.BasicDriverFeatureStep.$anonfun$getAdditionalPodSystemProperties$1(BasicDriverFeatureStep.scala:187) at scala.collection.immutable.List.foreach(List.scala:431) at org.apache.spark.deploy.k8s.features.BasicDriverFeatureStep.getAdditionalPodSystemProperties(BasicDriverFeatureStep.scala:178) at org.apache.spark.deploy.k8s.submit.KubernetesDriverBuilder.$anonfun$buildFromFeatures$5(KubernetesDriverBuilder.scala:86) at scala.collection.LinearSeqOptimized.foldLeft(LinearSeqOptimized.scala:126) at scala.collection.LinearSeqOptimized.foldLeft$(LinearSeqOptimized.scala:122) at scala.collection.immutable.List.foldLeft(List.scala:91) at org.apache.spark.deploy.k8s.submit.KubernetesDriverBuilder.buildFromFeatures(KubernetesDriverBuilder.scala:84) at org.apache.spark.deploy.k8s.submit.Client.run(KubernetesClientApplication.scala:104) at org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.$anonfun$run$5(KubernetesClientApplication.scala:248) at org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.$anonfun$run$5$adapted(KubernetesClientApplication.scala:242) at org.apache.spark.util.Utils$.tryWithResource(Utils.scala:2738) at org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.run(KubernetesClientApplication.scala:242) at org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.start(KubernetesClientApplication.scala:214) at org.apache.spark.deploy.SparkSubmit.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:958) at org.apache.spark.deploy.SparkSubmit.doRunMain$1(SparkSubmit.scala:180) at org.apache.spark.deploy.SparkSubmit.submit(SparkSubmit.scala:203) at org.apache.spark.deploy.SparkSubmit.doSubmit(SparkSubmit.scala:90) at org.apache.spark.deploy.SparkSubmit$$anon$2.doSubmit(SparkSubmit.scala:1046) at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:1055) at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)Caused by: org.apache.spark.SparkException: Error uploading file spark-examples_2.12-3.4.0-SNAPSHOT.jar at org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileToHadoopCompatibleFS(KubernetesUtils.scala:355) at org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileUri(KubernetesUtils.scala:328) ... 30 more Caused by: org.apache.hadoop.fs.PathIOException: `Cannot get relative path for URI:file:///Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar': Input/output error at apache.hadoop.fs.s3a.impl.CopyFromLocalOperation.getFinalPath(CopyFromLocalOperation.java:365) at org.apache.hadoop.fs.s3a.impl.CopyFromLocalOperation.uploadSourceFromFS(CopyFromLocalOperation.java:226) at org.apache.hadoop.fs.s3a.impl.CopyFromLocalOperation.execute(CopyFromLocalOperation.java:170) at org.apache.hadoop.fs.s3a.S3AFileSystem.lambda$copyFromLocalFile$25(S3AFileSystem.java:3920) at org.apache.hadoop.fs.statistics.impl.IOStatisticsBinding.lambda$trackDurationOfOperation$5(IOStatisticsBinding.java:499) at org.apache.hadoop.fs.statistics.impl.IOStatisticsBinding.trackDuration(IOStatisticsBinding.java:444) at org.apache.hadoop.fs.s3a.S3AFileSystem.trackDurationAndSpan(S3AFileSystem.java:2337) at org.apache.hadoop.fs.s3a.S3AFileSystem.trackDurationAndSpan(S3AFileSystem.java:2356) at org.apache.hadoop.fs.s3a.S3AFileSystem.copyFromLocalFile(S3AFileSystem.java:3913) at org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileToHadoopCompatibleFS(KubernetesUtils.scala:352) ... 31 more
I add some logs
22/03/25 09:33:24 INFO KubernetesUtils: Uploading file: /Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar to dest: s3a://spark/spark-upload-a703d8e7-8dd2-4e29-beca-b4df2fedefbd/spark-examples_2.12-3.4.0-SNAPSHOT.jar... 22/03/25 09:33:24 INFO S3AFileSystem: Copying local file from /Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar to s3a://spark/spark-upload-a703d8e7-8dd2-4e29-beca-b4df2fedefbd/spark-examples_2.12-3.4.0-SNAPSHOT.jar 22/03/25 09:33:24 INFO CopyFromLocalOperation: Copying local file from /Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar to s3a://spark/spark-upload-a703d8e7-8dd2-4e29-beca-b4df2fedefbd/spark-examples_2.12-3.4.0-SNAPSHOT.jar 22/03/25 09:33:24 INFO CopyFromLocalOperation: execute#CopyFromLocalOperation, sourceFile is /Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar 22/03/25 09:33:24 INFO CopyFromLocalOperation: uploadSourceFromFS#CopyFromLocalOperation, localFile 1: path is LocatedFileStatus{path=file:/Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar; isDirectory=false; length=1567474; replication=1; blocksize=33554432; modification_time=1647874074000; access_time=1647874074000; owner=hengzhen.sq; group=staff; permission=rw-r--r--; isSymlink=false; hasAcl=false; isEncrypted=false; isErasureCoded=false} 22/03/25 09:33:24 INFO CopyFromLocalOperation: getFinalPath#CopyFromLocalOperation, src is file:/Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar, source is /Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar
It looks like copyFromLocalOperation doesn't support single file.
Attachments
Attachments
Issue Links
- is related to
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SPARK-38652 uploadFileUri should preserve file scheme
- Resolved
- relates to
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HADOOP-18925 S3A: add option "fs.s3a.optimized.copy.from.local.enabled" to enable/disable CopyFromLocalOperation
- Resolved