ArrayIndexOutOfBoundsException for many operations in gradle projects.

The exception is thrown when finding usages, refactoring,  and  sometimes "Go to" Symbol. The Exception is thrown in gradle projects..

SEVERE [org.openide.util.RequestProcessor]: Error in RequestProcessor org.netbeans.modules.refactoring.spi.impl.RefactoringPanel$3
java.lang.ArrayIndexOutOfBoundsException: arraycopy: last destination index 8 out of bounds for object array[6]
    at java.base/java.lang.System.arraycopy(Native Method)
    at org.netbeans.modules.refactoring.java.ui.tree.FolderTreeElement.getSourceGroup(FolderTreeElement.java:119)
    at org.netbeans.modules.refactoring.java.ui.tree.TreeElementFactoryImpl.getTreeElement(TreeElementFactoryImpl.java:55)
    at org.netbeans.modules.refactoring.spi.ui.TreeElementFactory.getTreeElement(TreeElementFactory.java:44)
    at org.netbeans.modules.refactoring.java.ui.tree.FileTreeElement.getParent(FileTreeElement.java:75)
    at org.netbeans.modules.refactoring.spi.impl.RefactoringPanel.createNode(RefactoringPanel.java:488)
    at org.netbeans.modules.refactoring.spi.impl.RefactoringPanel.createNode(RefactoringPanel.java:493)
    at org.netbeans.modules.refactoring.spi.impl.RefactoringPanel.createNode(RefactoringPanel.java:493)
    at org.netbeans.modules.refactoring.spi.impl.RefactoringPanel.createNode(RefactoringPanel.java:493)
    at org.netbeans.modules.refactoring.spi.impl.RefactoringPanel.access$1100(RefactoringPanel.java:80)
    at org.netbeans.modules.refactoring.spi.impl.RefactoringPanel$3.run(RefactoringPanel.java:765)
    at org.openide.util.RequestProcessor$Task.run(RequestProcessor.java:1418)
    at org.netbeans.modules.openide.util.GlobalLookup.execute(GlobalLookup.java:45)
    at org.openide.util.lookup.Lookups.executeWith(Lookups.java:278)
[catch] at org.openide.util.RequestProcessor$Processor.run(RequestProcessor.java:2033)