Details
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Sub-task
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Status: Resolved
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Major
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Resolution: Duplicate
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None
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None
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None
Description
Spark version : 2
Steps:
- Install virtualenv ( pip install virtualenv)
- create requirements.txt (pip freeze > /tmp/requirements.txt)
- start kmeans.py application in yarn-client mode.
The application fails with Runtime Exception
app log
17/01/05 19:49:59 INFO deprecation: mapred.task.partition is deprecated. Instead, use mapreduce.task.partition 17/01/05 19:49:59 INFO deprecation: mapred.job.id is deprecated. Instead, use mapreduce.job.id Invalid requirement: 'pip freeze' Traceback (most recent call last): File "/grid/0/hadoop/yarn/local/usercache/hrt_qa/appcache/application_1483592608863_0006/container_1483592608863_0006_01_000002/virtualenv_application_1483592608863_0006_0/lib/python2.7/site-packages/pip/req/req_install.py", line 82, in __init__ req = Requirement(req) File "/grid/0/hadoop/yarn/local/usercache/hrt_qa/appcache/application_1483592608863_0006/container_1483592608863_0006_01_000002/virtualenv_application_1483592608863_0006_0/lib/python2.7/site-packages/pip/_vendor/packaging/requirements.py", line 96, in __init__ requirement_string[e.loc:e.loc + 8])) InvalidRequirement: Invalid requirement, parse error at "u'freeze'" 17/01/05 19:50:03 WARN BlockManager: Putting block rdd_3_0 failed due to an exception 17/01/05 19:50:03 WARN BlockManager: Block rdd_3_0 could not be removed as it was not found on disk or in memory 17/01/05 19:50:03 ERROR Executor: Exception in task 0.0 in stage 0.0 (TID 0)
job client log
17/01/05 19:50:07 WARN TaskSetManager: Lost task 0.1 in stage 0.0 (TID 2, xxx.site, executor 1): java.lang.RuntimeException: Fail to run command: virtualenv_application_1483592608863_0006_1/bin/python -m pip --cache-dir /home/yarn install -r requirements.txt at org.apache.spark.api.python.PythonWorkerFactory.execCommand(PythonWorkerFactory.scala:142) at org.apache.spark.api.python.PythonWorkerFactory.setupVirtualEnv(PythonWorkerFactory.scala:128) at org.apache.spark.api.python.PythonWorkerFactory.<init>(PythonWorkerFactory.scala:70) at org.apache.spark.SparkEnv$$anonfun$createPythonWorker$1.apply(SparkEnv.scala:117) at org.apache.spark.SparkEnv$$anonfun$createPythonWorker$1.apply(SparkEnv.scala:117) at scala.collection.mutable.MapLike$class.getOrElseUpdate(MapLike.scala:194) at scala.collection.mutable.AbstractMap.getOrElseUpdate(Map.scala:80) at org.apache.spark.SparkEnv.createPythonWorker(SparkEnv.scala:116) at org.apache.spark.api.python.PythonRunner.compute(PythonRDD.scala:128) at org.apache.spark.api.python.PythonRDD.compute(PythonRDD.scala:63) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323) at org.apache.spark.rdd.RDD.iterator(RDD.scala:287) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323) at org.apache.spark.rdd.RDD$$anonfun$8.apply(RDD.scala:336) at org.apache.spark.rdd.RDD$$anonfun$8.apply(RDD.scala:334) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:957) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:948) at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:888) at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:948) at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:694) at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:334) at org.apache.spark.rdd.RDD.iterator(RDD.scala:285) at org.apache.spark.rdd.ZippedPartitionsRDD2.compute(ZippedPartitionsRDD.scala:89) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323) at org.apache.spark.rdd.RDD.iterator(RDD.scala:287) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323) at org.apache.spark.rdd.RDD.iterator(RDD.scala:287) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87) at org.apache.spark.scheduler.Task.run(Task.scala:99) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:282) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at java.lang.Thread.run(Thread.java:745)
Attachments
Issue Links
- duplicates
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SPARK-19095 virtualenv example does not work in yarn cluster mode
- Resolved